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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_13766416_13767046_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
13766416 - 13767046
Intron Length:
631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
ATAATTTCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ATCCCTTTAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
73.7
32.5
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
76.7
0.6
0.9
70.4
40.3
Minor 5ss
26.1
-2.7
2.9
22.6
37.5
Minor BPS
66.4
0.59
1.4
77.13
39.1

Associated Gene:

Gene:
FAM13C
Ensembl Gene ID:
ENSAPLG00000015441
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020997
13720703 - 13767302
46600