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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_13829856_13835420_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13829856 - 13835420
Intron Length:
5565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTCCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
AGCTCCAAAACT
Flanking Amino Acid:
LAVVFGPALFKIPVSPLACE
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
83.3
27.9
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
75.7
0.58
0.8
74.1
31.1
Minor 5ss
34.6
-1.7
2.8
44.2
37
Minor BPS
52.7
0.16
2
72.17
44.3

Associated Gene:

Gene:
FAM13C
Ensembl Gene ID:
ENSAPLG00000015441
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008352
13720703 - 13841812
121110