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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_13835605_13838759_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13835605 - 13838759
Intron Length:
3155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TTCTTTTTTACA
Flanking Amino Acid:
VCGGLLKTFQEHKIHTTECI
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
78.8
36.8
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
94.8
1.01
0.6
90.9
21.3
Minor 5ss
32.9
-2
3.4
47.9
47.8
Minor BPS
64.3
0.44
1.6
74.15
37.7

Associated Gene:

Gene:
FAM13C
Ensembl Gene ID:
ENSAPLG00000015441
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008352
13720703 - 13841812
121110