Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_13838970_13839172_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13838970 - 13839172

Intron Length:

203

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGTTCA

5'SS Class:

strong_major

3'SS Sequence:

TCTTCTTGGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTCAT

U12 Branch Point Sequence:

TGTTTCATATTT

Flanking Amino Acid:

TQMVEYLEVFGLQHVGIFRI

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.8

79.4

29.6

Major BPS

82.2

0.8

1.1

85.7

34.9

Major PPT

74.1

0.54

72.4

37.7

Minor 5ss

40.6

-1

2.7

47.5

42.3

Minor BPS

55.1

0.24

1.9

77.23

39.4

Associated Gene:

Gene:

FAM13C

Ensembl Gene ID:

ENSAPLG00000015441

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008352

13720703 - 13841812

121110