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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_13839348_13841782_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13839348 - 13841782
Intron Length:
2435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
TTTTATTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTCTTATTG
Flanking Amino Acid:
MGASASFSICKSLSSVQVRH
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
70.6
35.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.6
0.78
0.8
77.5
36.5
Minor 5ss
34
-1.8
3.2
40.8
45.4
Minor BPS
68.9
0.45
1.6
74.56
38.3

Associated Gene:

Gene:
FAM13C
Ensembl Gene ID:
ENSAPLG00000015441
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008352
13720703 - 13841812
121110