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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_13853098_13853403_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13853098 - 13853403
Intron Length:
306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCACCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCCTTTTATT
Flanking Amino Acid:
LGNSLGPPIVGWFYDWTQEY
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.4
31.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
81
0.7
0.8
78.6
29
Minor 5ss
37
-1.5
3.2
47.9
47.8
Minor BPS
67.9
0.65
1.6
85.32
34.8

Associated Gene:

Gene:
SLC16A9
Ensembl Gene ID:
ENSAPLG00000008084
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008403
13852919 - 13866620
13702