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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_13854313_13856184_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13854313 - 13856184
Intron Length:
1872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCAGTTTAAAC
Flanking Amino Acid:
RGLALGLISTGSSVGLFIYA
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
83.3
29.2
Major BPS
100
1.24
0.5
100
0
Major PPT
85.1
0.79
0.7
81.1
30.5
Minor 5ss
50
0
2.8
73.4
43.4
Minor BPS
50.7
0
1.9
63.89
41.8

Associated Gene:

Gene:
SLC16A9
Ensembl Gene ID:
ENSAPLG00000008084
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008403
13852919 - 13866620
13702