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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_13856281_13857199_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13856281 - 13857199
Intron Length:
919

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
AATCTTTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTATCCCAAATC
Flanking Amino Acid:
FLYLSYGIVVGLGCGLLYTA
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
73.4
37.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
79.2
0.66
0.9
70.3
40.4
Minor 5ss
33
-1.9
2.9
37.5
41.1
Minor BPS
56
0.17
2
71.97
39.3

Associated Gene:

Gene:
SLC16A9
Ensembl Gene ID:
ENSAPLG00000008084
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008403
13852919 - 13866620
13702