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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_13857344_13866424_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13857344 - 13866424
Intron Length:
9081

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
GCTTTTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TTTACAACAAAT
Flanking Amino Acid:
SLANGIGLLASPVCSICVSS
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
81.2
32.7
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
80.8
0.69
0.8
73.6
37
Minor 5ss
41.5
-0.9
2.8
57
41.2
Minor BPS
46
-0.2
2.1
73.47
42.1

Associated Gene:

Gene:
SLC16A9
Ensembl Gene ID:
ENSAPLG00000008084
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008403
13852919 - 13866620
13702