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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_1388101_1399695_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1388101 - 1399695
Intron Length:
11595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGACTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTTGCTTTATTT
Flanking Amino Acid:
TVSAEDQDPPGTPASRVRYK
Intron Amino Acid Position:
953

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
74.5
37.6
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
79.5
0.66
0.9
70
40.5
Minor 5ss
39.2
-1.2
2.9
49.4
46.6
Minor BPS
65.7
0.57
1.7
83.14
39

Associated Gene:

Gene:
PCDH15
Ensembl Gene ID:
ENSAPLG00000003312
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003398
1311071 - 1609417
298347