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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_13893166_13895533_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13893166 - 13895533
Intron Length:
2368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTAAACATAATT
Flanking Amino Acid:
QHMGPSHGITRPSPRRSNSP
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
85
32.3
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
83.6
0.76
0.8
77.8
36
Minor 5ss
43.9
-0.7
2.9
66.1
38.6
Minor BPS
54.7
0.23
1.8
76.18
39.8

Associated Gene:

Gene:
CCDC6
Ensembl Gene ID:
ENSAPLG00000008230
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008570
13891808 - 13917742
25935