About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_13895659_13899117_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13895659 - 13899117
Intron Length:
3459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TAACAATTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CTTGTTTTAACA
Flanking Amino Acid:
SPSSSRPISPGLSYASHTVG
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
86
29.7
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
67.3
0.39
1
63.3
42.3
Minor 5ss
41.2
-1
3
56.7
42
Minor BPS
68.8
0.59
1.4
73.92
38.7

Associated Gene:

Gene:
CCDC6
Ensembl Gene ID:
ENSAPLG00000008230
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008570
13891808 - 13917742
25935