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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_13899219_13902504_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13899219 - 13902504
Intron Length:
3286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTGTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TATTCTTTACCT
Flanking Amino Acid:
SESSLEMDDERYFNEMSAQG
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.8
88.7
25.2
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
81.9
0.72
0.9
84.5
30.4
Minor 5ss
42.3
-0.8
2.8
59.2
45.4
Minor BPS
74.9
0.86
1.5
88.93
35.9

Associated Gene:

Gene:
CCDC6
Ensembl Gene ID:
ENSAPLG00000008230
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008570
13891808 - 13917742
25935