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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_13905390_13907018_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13905390 - 13907018
Intron Length:
1629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTTTGTCTT
5'SS Class:
major
3'SS Sequence:
ATTTTTTATTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTTTTTATTC
Flanking Amino Acid:
KRMDKLEAEKRILQEKLDQP
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.5
0.41
1.2
66.9
43.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.7
0.83
0.8
85.9
33
Minor 5ss
43.1
-0.8
2.8
61.2
43.1
Minor BPS
62.3
0.36
1.5
70.52
35.3

Associated Gene:

Gene:
CCDC6
Ensembl Gene ID:
ENSAPLG00000008230
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008570
13891808 - 13917742
25935