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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_13907123_13911783_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13907123 - 13911783
Intron Length:
4661

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTCCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATCATTTTAATT
Flanking Amino Acid:
TISKQLTLEQLRREKIDLEN
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1.1
75.3
40.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
86.3
0.82
0.7
81
24.1
Minor 5ss
42.4
-0.8
2.9
60.3
44
Minor BPS
64.8
0.54
1.2
74.03
37.5

Associated Gene:

Gene:
CCDC6
Ensembl Gene ID:
ENSAPLG00000008230
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008570
13891808 - 13917742
25935