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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_13986100_13988293_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13986100 - 13988293
Intron Length:
2194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTGTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCAAAT
U12 Branch Point Sequence:
TGTTTTGTTACA
Flanking Amino Acid:
LNITLPAHKKTEKADRRQNF
Intron Amino Acid Position:
1416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
79.8
33.2
Major BPS
64.7
0.37
1.1
69.5
34.1
Major PPT
85.4
0.8
0.9
79.9
37.7
Minor 5ss
44.8
-0.6
3.2
66.9
44.3
Minor BPS
48
-0.1
2.2
66.95
39.5

Associated Gene:

Gene:
ANK3
Ensembl Gene ID:
ENSAPLG00000008610
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027875
13951477 - 14103581
152105
ENSAPLT00000009208
13951477 - 14103581
152105