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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_1399813_1418866_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1399813 - 1418866
Intron Length:
19054

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TTATGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
AAACTCTTAATT
Flanking Amino Acid:
GIATVTVRVKDMNDYSPVFS
Intron Amino Acid Position:
914

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.2
35.1
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
85.8
0.81
0.8
80.8
36.6
Minor 5ss
29.8
-2.3
3.3
38.8
46.3
Minor BPS
67.2
0.62
1.2
73.94
36.4

Associated Gene:

Gene:
PCDH15
Ensembl Gene ID:
ENSAPLG00000003312
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003398
1311071 - 1609417
298347