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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_14019836_14026776_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14019836 - 14026776
Intron Length:
6941

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTGTG
5'SS Class:
major
3'SS Sequence:
TTTCTTCTGGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
AGCTTCTGATTT
Flanking Amino Acid:
DAEYLSDVEEGEDAMTGDTD
Intron Amino Acid Position:
846

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
70.7
39.5
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
83
0.74
0.9
80.9
31.1
Minor 5ss
42.5
-0.8
3.1
57.9
46.8
Minor BPS
48.6
-0
1.7
63.39
41.2

Associated Gene:

Gene:
ANK3
Ensembl Gene ID:
ENSAPLG00000008610
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009208
13951477 - 14103581
152105