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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_14027108_14029626_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14027108 - 14029626
Intron Length:
2519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTTCCTTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
TTTCCTTTGACA
Flanking Amino Acid:
VVTEETMTTITVTEKHKMNV
Intron Amino Acid Position:
801

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
75.4
33.7
Major BPS
69.8
0.49
1
61
37.5
Major PPT
82.3
0.73
0.9
79.7
32.4
Minor 5ss
38.6
-1.3
2.7
49.8
40.3
Minor BPS
78
0.87
1.1
84.01
28.9

Associated Gene:

Gene:
ANK3
Ensembl Gene ID:
ENSAPLG00000008610
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027875
13951477 - 14103581
152105
ENSAPLT00000009208
13951477 - 14103581
152105