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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_14051827_14054226_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14051827 - 14054226
Intron Length:
2400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACAAGT
5'SS Class:
major
3'SS Sequence:
GTTTGGTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AAATATTTATGT
Flanking Amino Acid:
HGASIQAVTESGLTPIHVAA
Intron Amino Acid Position:
406

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
75.5
40.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.8
0.69
0.9
76.9
42.1
Minor 5ss
40.7
-1
3
58.6
45.5
Minor BPS
45.7
-0.2
2
61.36
42.2

Associated Gene:

Gene:
ANK3
Ensembl Gene ID:
ENSAPLG00000008610
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027875
13951477 - 14103581
152105
ENSAPLT00000009208
13951477 - 14103581
152105