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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_14068388_14078777_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14068388 - 14078777
Intron Length:
10390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTCTCTTCCACA
Flanking Amino Acid:
RGAAVDFTARNDITPLHVAS
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
75.5
40.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
84.1
0.77
0.7
79.7
25.9
Minor 5ss
36.6
-1.5
3
41.4
44.7
Minor BPS
54.8
0.14
2
71.01
41.7

Associated Gene:

Gene:
ANK3
Ensembl Gene ID:
ENSAPLG00000008610
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027875
13951477 - 14103581
152105
ENSAPLT00000009208
13951477 - 14103581
152105