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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_14089270_14103545_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14089270 - 14103545
Intron Length:
14276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TAATTTCTAACA
Flanking Amino Acid:
VEEGECFPEQSDTNASYLRA
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
84.6
33.2
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
87.3
0.84
0.6
81.2
30.9
Minor 5ss
47
-0.3
2.9
67.1
37.8
Minor BPS
59.8
0.3
1.6
69.81
36

Associated Gene:

Gene:
ANK3
Ensembl Gene ID:
ENSAPLG00000008610
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027875
13951477 - 14103581
152105
ENSAPLT00000009208
13951477 - 14103581
152105