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Intron Name: Anas_platyrhynchos_platyrhynchos_6_1419092_1420281_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1419092 - 1420281

Intron Length:

1190

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGAAAG

5'SS Class:

strong_major

3'SS Sequence:

TGGCATGGTCTAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TAAGTAT

U12 Branch Point Sequence:

TTGCCTTAAGTA

Flanking Amino Acid:

PPGTVFLQIEAKDVDLGSNV

Intron Amino Acid Position:

839

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.4

0.98

0.8

80.7

33.7

Major BPS

0.05

1.4

43.5

Major PPT

55.7

0.13

1.1

46.6

45.6

Minor 5ss

32.8

-2

2.9

39.4

46.1

Minor BPS

47.7

-0.1

1.8

60.12

40.7

Associated Gene:

Gene:

PCDH15

Ensembl Gene ID:

ENSAPLG00000003312

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003398

1311071 - 1609417

298347