About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_14307927_14309523_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14307927 - 14309523
Intron Length:
1597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGCG
5'SS Class:
major
3'SS Sequence:
CTTGTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
ATGTATTTTACT
Flanking Amino Acid:
DYTKIEKIGEGTYGVVYKGR
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
65.8
40.2
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
89.7
0.89
0.7
88
29.4
Minor 5ss
26.2
-2.7
3.2
31.7
42.8
Minor BPS
56.2
0.28
1.8
75.03
41.6

Associated Gene:

Gene:
CDK1
Ensembl Gene ID:
ENSAPLG00000010270
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010718
14307877 - 14315633
7757