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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_14309681_14310787_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14309681 - 14310787
Intron Length:
1107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTGGA
5'SS Class:
major
3'SS Sequence:
ACTCAATTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAA
U12 Branch Point Sequence:
TTCTACTCAATT
Flanking Amino Acid:
LKELQHPNIVCLQDVLMQDS
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
66.8
38.7
Major BPS
77.9
0.69
0.8
77.9
25.8
Major PPT
74.8
0.56
0.9
70.1
39.5
Minor 5ss
38.3
-1.3
3.1
46.2
44.4
Minor BPS
63.7
0.51
1.7
81.26
40.6

Associated Gene:

Gene:
CDK1
Ensembl Gene ID:
ENSAPLG00000010270
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010718
14307877 - 14315633
7757