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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_14310912_14311331_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14310912 - 14311331
Intron Length:
420

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGAGG
5'SS Class:
major
3'SS Sequence:
ATCCTGTCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
TTTTCCCCACTT
Flanking Amino Acid:
GQYLDRSRVKSYLYQILQGI
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
66.2
44.9
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
75.8
0.58
0.9
68.6
36.7
Minor 5ss
31.7
-2.1
3.1
40.2
45.5
Minor BPS
52.1
0.14
2.1
81.02
40.9

Associated Gene:

Gene:
CDK1
Ensembl Gene ID:
ENSAPLG00000010270
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010718
14307877 - 14315633
7757