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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_14311503_14311957_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14311503 - 14311957
Intron Length:
455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
CCATGTTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AATTCTGTAACC
Flanking Amino Acid:
GIPVRVYTHEVVTLWYRSPE
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
72.5
39.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
67
0.38
1
61.6
38.7
Minor 5ss
41.3
-1
2.8
49.6
41
Minor BPS
62.2
0.36
2
73.79
36.9

Associated Gene:

Gene:
CDK1
Ensembl Gene ID:
ENSAPLG00000010270
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010718
14307877 - 14315633
7757