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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_14312122_14312248_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14312122 - 14312248
Intron Length:
127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TGTCCTTGCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TGTCCTTGCACA
Flanking Amino Acid:
SEIDQLFRIFRALGTPNNEV
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
70.6
41.3
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
72.9
0.52
0.9
67.9
37.6
Minor 5ss
39.7
-1.2
2.8
49
47.2
Minor BPS
49.7
-0
1.9
66.58
39.6

Associated Gene:

Gene:
CDK1
Ensembl Gene ID:
ENSAPLG00000010270
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010718
14307877 - 14315633
7757