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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_14312391_14315516_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14312391 - 14315516
Intron Length:
3126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCTTTTCATT
Flanking Amino Acid:
LDENGLDLLSKMLIYDPAKR
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.1
69.5
41.3
Major BPS
100
1.24
0.5
100
0
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
39
-1.2
2.8
55.8
41.5
Minor BPS
59.7
0.39
1.7
80.3
36.2

Associated Gene:

Gene:
CDK1
Ensembl Gene ID:
ENSAPLG00000010270
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010718
14307877 - 14315633
7757