About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_14342045_14342557_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14342045 - 14342557
Intron Length:
513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTAATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTCTTTTTAATC
Flanking Amino Acid:
FRKEIKAKSSDNQEYFERHR
Intron Amino Acid Position:
520

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
70.5
33.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
80.8
0.69
0.9
82.2
33.2
Minor 5ss
36.8
-1.5
3.3
48.1
47.6
Minor BPS
74.9
0.76
1.1
77
33.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010455
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010894
14341875 - 14351471
9597