About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_1434230_1448295_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1434230 - 1448295
Intron Length:
14066

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTATTCATAATT
Flanking Amino Acid:
VTASDGRPDGTSTATVNIVV
Intron Amino Acid Position:
694

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
82.3
32.2
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
89.4
0.89
0.6
84.8
22.8
Minor 5ss
44.3
-0.6
2.8
53.4
43.8
Minor BPS
69.6
0.69
1.5
85.51
34.4

Associated Gene:

Gene:
PCDH15
Ensembl Gene ID:
ENSAPLG00000003312
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003398
1311071 - 1609417
298347