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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_14342664_14343793_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14342664 - 14343793
Intron Length:
1130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAG
U12 Branch Point Sequence:
TTTTTCTTTACA
Flanking Amino Acid:
EVLSYLELAQFHNANQLAAW
Intron Amino Acid Position:
485

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
54.6
0.12
1.5
65.3
41.5
Major PPT
96.1
1.04
0.5
91.7
19.5
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
77.1
0.85
1.5
87.01
30.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010455
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010894
14341875 - 14351471
9597