About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_14343883_14345538_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14343883 - 14345538
Intron Length:
1656

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGACT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TCTTCTCTAACA
Flanking Amino Acid:
FCLPHLVALAEQHAVQELTK
Intron Amino Acid Position:
455

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.8
85.2
31.7
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
81.1
0.7
0.8
77.2
30.1
Minor 5ss
34.9
-1.7
3.2
49.5
46.5
Minor BPS
70.2
0.63
1.6
79.78
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010455
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010894
14341875 - 14351471
9597