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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_14345690_14348138_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14345690 - 14348138
Intron Length:
2449

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTGTC
5'SS Class:
major
3'SS Sequence:
ATATCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TATTTTTTAATA
Flanking Amino Acid:
GSFIESLNSEVVLPNINKTS
Intron Amino Acid Position:
405

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
74.2
34.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
82.1
0.72
0.9
73.8
40.9
Minor 5ss
43.4
-0.7
3.1
61.2
43.7
Minor BPS
77.2
0.85
1
79.7
29.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010455
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010894
14341875 - 14351471
9597