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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_14349663_14351349_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14349663 - 14351349
Intron Length:
1687

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTAACCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATCAT
U12 Branch Point Sequence:
TTTTGTTTAACC
Flanking Amino Acid:
AVNRARRPLARPIKRGDILP
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
81.9
32.1
Major BPS
73
0.57
1.2
74
41.2
Major PPT
68.7
0.42
0.9
60.5
40.5
Minor 5ss
42
-0.9
3.5
64.1
47.4
Minor BPS
75.7
0.79
1.7
85.93
32.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010455
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010894
14341875 - 14351471
9597