About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_14364575_14364946_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14364575 - 14364946
Intron Length:
372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGACT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTGTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTGAT
U12 Branch Point Sequence:
TAATGTGTATTT
Flanking Amino Acid:
AIDQYRVCQEVLERSRDVVD
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.8
85.2
31.7
Major BPS
78.6
0.71
1.2
71.4
45.1
Major PPT
80.8
0.69
0.9
73.8
41.4
Minor 5ss
34.9
-1.7
3.2
49.5
46.5
Minor BPS
41.6
-0.5
2.4
61.18
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028830
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034093
14364467 - 14365138
672