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Intron Name: Anas_platyrhynchos_platyrhynchos_6_1448390_1452466_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1448390 - 1452466

Intron Length:

4077

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTAGA

5'SS Class:

strong_major

3'SS Sequence:

GTTTTATCACTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTGAT

U12 Branch Point Sequence:

TTTGTTTTATCA

Flanking Amino Acid:

DPQQVFNLSQSSGLLALGKP

Intron Amino Acid Position:

662

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

96.3

1.09

0.7

87.1

Major BPS

81.2

0.78

1.1

71.4

45.1

Major PPT

70.9

0.47

0.9

64.5

41.6

Minor 5ss

35.1

-1.7

2.7

42.8

Minor BPS

61.3

0.35

1.7

74.08

38.4

Associated Gene:

Gene:

PCDH15

Ensembl Gene ID:

ENSAPLG00000003312

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003398

1311071 - 1609417

298347