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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_14492617_14494986_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14492617 - 14494986
Intron Length:
2370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTACT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTATTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTTGTTTTAACA
Flanking Amino Acid:
SMLQFPLDLAVQHIGCKPTA
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1.1
85.6
30.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
86.9
0.83
0.8
81.4
35.2
Minor 5ss
34.7
-1.7
2.6
44.5
42.8
Minor BPS
69.8
0.62
1.3
75.16
36.6

Associated Gene:

Gene:
TMEM26
Ensembl Gene ID:
ENSAPLG00000010590
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011032
14492201 - 14506292
14092