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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_14495064_14496120_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14495064 - 14496120
Intron Length:
1057

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TCCCCTCCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TGCATCTTCACT
Flanking Amino Acid:
ASETLAIKDVRKNFVLLNAI
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
1
79
36.4
Major BPS
77.5
0.68
1
79.6
33
Major PPT
69.9
0.45
0.7
64.6
24.1
Minor 5ss
34.4
-1.8
3.3
49.4
46.6
Minor BPS
56.3
0.28
1.8
72.79
44.1

Associated Gene:

Gene:
TMEM26
Ensembl Gene ID:
ENSAPLG00000010590
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011032
14492201 - 14506292
14092