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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_14496342_14496823_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14496342 - 14496823
Intron Length:
482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGGGACAC
5'SS Class:
major
3'SS Sequence:
GTCTTTTAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAA
U12 Branch Point Sequence:
TGTCTTTTAAAC
Flanking Amino Acid:
EGIDHHIIQTAKVIVNQLST
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.2
0.38
1.1
53.4
39.9
Major BPS
74.9
0.62
1
67.3
39.2
Major PPT
73
0.52
1
69.7
39.6
Minor 5ss
25.9
-2.8
3.2
33.5
42
Minor BPS
62.9
0.39
1.4
69.55
35.2

Associated Gene:

Gene:
TMEM26
Ensembl Gene ID:
ENSAPLG00000010590
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011032
14492201 - 14506292
14092