About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_14496938_14502260_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14496938 - 14502260
Intron Length:
5323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTATT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCACAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TTGTTCACAACA
Flanking Amino Acid:
WLLEIHHGTQHCSNESGVVQ
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1
85.4
30.8
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
72.2
0.5
1
67.7
37.7
Minor 5ss
47.8
-0.2
2.5
68.9
41.7
Minor BPS
56.6
0.2
1.8
72.32
39.6

Associated Gene:

Gene:
TMEM26
Ensembl Gene ID:
ENSAPLG00000010590
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011032
14492201 - 14506292
14092