About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_14502340_14505508_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14502340 - 14505508
Intron Length:
3169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAA
U12 Branch Point Sequence:
TGTGATAGAATA
Flanking Amino Acid:
LKFKQGRGYKWFSPAIFLYL
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
0.9
75.8
35.2
Major BPS
70.2
0.5
1
72.1
33
Major PPT
93
0.97
0.6
88.6
20.7
Minor 5ss
37.7
-1.4
3
45.4
43.9
Minor BPS
43
-0.5
1.8
54.86
37.8

Associated Gene:

Gene:
TMEM26
Ensembl Gene ID:
ENSAPLG00000010590
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011032
14492201 - 14506292
14092