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Intron Name: Anas_platyrhynchos_platyrhynchos_6_1452547_1458198_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1452547 - 1458198

Intron Length:

5652

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGATGC

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTCTTAAAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TCTTTCTTAAAG

Flanking Amino Acid:

RIGAVLLNLQAFDREGDPIR

Intron Amino Acid Position:

636

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

67.1

39.7

Major BPS

96.5

1.15

0.6

34.2

Major PPT

80.6

0.69

82.2

27.1

Minor 5ss

37.2

-1.4

3.3

45.6

Minor BPS

71.6

0.54

1.5

72.05

40.8

Associated Gene:

Gene:

PCDH15

Ensembl Gene ID:

ENSAPLG00000003312

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003398

1311071 - 1609417

298347