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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_1458332_1463519_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1458332 - 1463519
Intron Length:
5188

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTTCTCATTT
Flanking Amino Acid:
ASDSAPPAQRRSSITTVYIE
Intron Amino Acid Position:
591

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
79.8
35.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
87.9
0.85
0.7
85.8
27
Minor 5ss
36
-1.6
3
50.1
46.1
Minor BPS
62.3
0.47
1.8
83.64
37.8

Associated Gene:

Gene:
PCDH15
Ensembl Gene ID:
ENSAPLG00000003312
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003398
1311071 - 1609417
298347