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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_14610044_14612809_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14610044 - 14612809
Intron Length:
2766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTATTG
5'SS Class:
major
3'SS Sequence:
ATTTTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ATTTTCTTTACA
Flanking Amino Acid:
IPNEIIGNLEAEINEKLQIQ
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
65.5
41.1
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
90
0.9
0.7
84.5
29.7
Minor 5ss
40.6
-1.1
3.3
56.3
47.8
Minor BPS
72.5
0.7
1.5
81.25
33.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025457
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020612
14578333 - 14612887
34555