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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_146125_155696_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
146125 - 155696
Intron Length:
9572

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTATCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTATTTATCT
Flanking Amino Acid:
GSDNVLHYNQSTPPFYELEN
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.3
0.75
0.8
74.3
40.5
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
63.3
0.5
1.8
82.18
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015012
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028996
145891 - 160582
14692