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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_14618553_14622572_F

Intron Information:

Intron Rank:
132272
Intron Class:
major
Intron Phase:
Intron Coordinates:
14618553 - 14622572
Intron Length:
4020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGGTTGTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TGATTTTTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
78.4
0.64
1
72.2
42.7
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
62.5
0.47
1.6
76.8
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021061
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044148
14618489 - 14628315
9827