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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_14624604_14627219_F

Intron Information:

Intron Rank:
132274
Intron Class:
major
Intron Phase:
Intron Coordinates:
14624604 - 14627219
Intron Length:
2616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTCATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTGTTCTCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
83.2
30.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
76.2
0.59
0.9
74.8
35.2
Minor 5ss
32.4
-2
3
40.7
45.5
Minor BPS
55.6
0.25
1.8
75.42
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021061
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044148
14618489 - 14628315
9827