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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_14668765_14700594_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14668765 - 14700594
Intron Length:
31830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACATAG
U12 Branch Point Sequence:
TTTTTTTTCCCT
Flanking Amino Acid:
KDILKEKADLGEDDEDSNLL
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
80
33.6
Major BPS
40
-0.6
1.4
32.7
34.6
Major PPT
89.2
0.88
0.7
81.2
36.5
Minor 5ss
37.7
-1.4
3.3
53.4
43.8
Minor BPS
45.4
-0.2
3.6
82.56
39.6

Associated Gene:

Gene:
ARID5B
Ensembl Gene ID:
ENSAPLG00000010915
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011394
14666197 - 14768239
102043