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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_14700826_14733714_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14700826 - 14733714
Intron Length:
32889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
CATTAATTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
TCTCCATTAATT
Flanking Amino Acid:
IENESICDEFAPNLKGRPRK
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
74.1
36.5
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
78.1
0.63
0.9
74
40
Minor 5ss
34.7
-1.7
2.9
41.5
39.2
Minor BPS
68.8
0.67
1.6
82.74
38.4

Associated Gene:

Gene:
ARID5B
Ensembl Gene ID:
ENSAPLG00000010915
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011394
14666197 - 14768239
102043